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Keto Pumpkin Cheesecake Bars have a buttery almond flour pecan crust, a creamy cheesecake center, and a warmly spiced pumpkin pie layer. Each square is rich and smooth with plenty of fall flavor, but no traditional cookie crust, flour crust or refined sugar.

Why You’ll Love These Keto Pumpkin Pie Bars
- Three layers in every bite: A buttery almond flour pecan crust, creamy cheesecake, and warmly spiced pumpkin pie filling.
- Easy to make ahead: The bars need time to chill, so you can make them the night before.
- Lower in carbs: Almond flour, pecans, and keto-friendly sweeteners replace a traditional flour crust and refined sugar.
- Made for fall gatherings: Once chilled, the bars are easy to slice and serve for Thanksgiving, Christmas, or another holiday meal.
The three layers give these keto pumpkin pie cheesecake bars the flavor of pumpkin pie and the creamy texture of cheesecake in every slice.
Ingredients for Keto Pumpkin Cheesecake Bars
The full ingredient amounts are in the recipe card below.
- Almond flour: Use finely ground almond flour rather than coarse almond meal.
- Pecans: These give the crust a buttery flavor and a little crunch.
- Cream cheese: Let it soften before mixing so the cheesecake layer comes out smooth.
- Sour cream: This keeps the cheesecake creamy and adds a little tang.
- Pumpkin purée: Use plain pumpkin purée, not pumpkin pie filling.
- Pumpkin pie spice: Use a store-bought blend or my homemade Pumpkin Pie Spice, made with cinnamon, ginger, nutmeg, allspice, and cloves.
- Keto sweeteners: Granular sweetener works in the crust and cheesecake. A brown sugar replacement adds deeper flavor to the pumpkin layer.
- Brandy: This is optional, but it adds a little extra warmth to the pumpkin filling.

Is Pumpkin Keto-Friendly?
Pumpkin can fit into a keto or low-carb way of eating when you keep the serving size in mind. It has more carbs than some vegetables, but you do not need very much to add plenty of flavor to keto pumpkin bars. This recipe uses half a cup of pumpkin purée for 12 bars. That is enough to give the top layer its pumpkin pie flavor without adding a large amount to each serving.
Check the label before buying canned pumpkin. Plain pumpkin purée is different from pumpkin pie filling, which usually contains added sugar.
What Makes These Healthy Pumpkin Cheesecake Bars Low Carb?
Traditional pumpkin cheesecake bars often use a cookie, graham cracker, or flour-based crust along with white and brown sugar. These low-carb pumpkin cheesecake bars use almond flour and pecans for the crust. Granular and brown sugar replacements sweeten the cheesecake and pumpkin layers without regular sugar. You still get the creamy cheesecake texture and warm pumpkin pie flavor, just with ingredients that work better for a low-carb dessert.
How to Make Keto Pumpkin Cheesecake Bars
The video in the recipe card shows how to build all three layers. These visual cues will help as you go.
Make the Almond Flour Pecan Crust
The crust should look evenly moistened and hold together when pressed. Pack it firmly into the corners of the pan so the bars have an even base.
Add the Cheesecake Layer
Mix until the filling looks smooth with no visible pieces of cream cheese. After its first bake, the surface should look lightly set rather than wet.
SAVE THIS RECIPE
Top with the Pumpkin Pie Filling
Pour the pumpkin filling gently over the cheesecake layer to keep the layers from mixing too much. A few small swirls are completely fine.
Bake Until the Center Has a Slight Jiggle
The edges should look set, while the center still moves slightly when you gently shake the pan. The bars will continue to firm up as they cool.
Chill Before Slicing
Refrigerate the bars for at least four hours, but overnight gives you the cleanest slices. Wipe your knife between cuts to keep the layers neat.

How to Get Clean, Defined Layers
The pumpkin and cheesecake layers may swirl together a little where they meet. That will not change the flavor, but these tips can help keep them more defined:
- Bake the cheesecake layer briefly before adding the pumpkin filling.
- Pour the pumpkin filling slowly and close to the surface.
- Avoid spreading the pumpkin back and forth more than needed.
- Chill the bars completely before slicing.
Can I Use a Different Crust?
I use an almond flour pecan crust because it adds a buttery, nutty flavor and works well for a low-carb dessert. You can also use your favorite keto baking mix like I do in Keto Cheesecake Brownies. Prepare it according to the package directions and use it as the base for the cheesecake and pumpkin layers. The thickness and texture may change depending on the mix you choose.
Make These Bars the Night Before
These bars need time to cool and set, so I usually make them the night before a holiday. Bake the bars, let them cool, then cover and refrigerate them overnight. Keep them chilled until you are ready to cut and serve them. Making dessert early also frees up time for the rest of your Thanksgiving recipes or Christmas recipes.
How to Store and Freeze Them
- Refrigerator: Store the bars in an airtight container for up to four days.
- Freezer: Wrap one or two chilled bars in parchment paper, then place them in a freezer-safe bag.
- To thaw: Move the bars to the refrigerator and let them thaw before serving.
- To serve: Keep them cold until you are ready to eat them so the layers stay firm.
Frequently Asked Questions
The cheesecake layer may not have set enough before the pumpkin filling was added, or the pumpkin may have been poured too quickly. A little swirling is normal and does not affect the flavor.
The edges should look set, while the center should still jiggle slightly when you move the pan. The middle will firm up as the bars cool and chill.
You can, but the bars will be thicker and may need more time in the oven. A 9-inch square pan gives you the thickness and baking time used in this recipe.
The night before is ideal. This gives the cheesecake plenty of time to set and makes the bars easier to slice.
Yes. Wrap the chilled bars individually or in small portions, then place them in a freezer-safe bag. Thaw them in the refrigerator before serving.

Keto Pumpkin Cheesecake Bars
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Recommended Equipment
Ingredients
Almond Pecan Crust
- 1.5 cups Almond Flour
- 1/2 cup Salted Pecans
- 4 tbsp Butter
- 3 tbsp Granular Sweetener
Keto Cheesecake Layer
- 8 oz Cream Cheese
- 1/4 cup Sour Cream
- 2 large Eggs
- 1 tsp Vanilla Extract
- 1/4 cup Granular Sweetener
Pumpkin Pie Layer
- 1/4 cup Butter
- 2/3 cup Keto Brown Sugar Replacement
- 1/3 cup Organic Heavy Whipping Cream
- 1/2 cup Pumpkin Puree
- 1.5 tsp Pumpkin Pie Spice, click for my recipe
- 1 large Eggs
- 1 tsp Vanilla Extract
- 2 tsp brandy, optional
Instructions
- Preheat the oven to 350
- Mix all of the ingredients for the crust in a blender or bowl.
- Use a rubber spatula to press the crust down into the square pan
- Cook crust for 5 minutes and remove it from the oven
- Mix cheesecake layer by adding all of the ingredients to a stand mixer
- Add the cheesecake layer to the pre-cooked crust & cook this layer for 8 minutes
- Mix all of the ingredients for the pumpkin pie layer
- Add it to the top of the cheesecake layer
- Cook for an additional 35-40 minutes. You want the center of the cheesecake to be jiggly.
- Allow the dessert to cool. Refrigerate it for at least 4 hours.
SAVE THIS RECIPE
Recipe Notes
Nutrition Details
The nutrition facts come from entering the recipe ingredients into a database of food ingredients. They may vary for any recipe based on the exact product used.























