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Home » Healthy Recipes » Keto Bagel Recipe (Fathead Bagels)

Keto Bagel Recipe (Fathead Bagels)

Last Updated May 2, 2023. Published May 2, 2023 By Davinah Cenou Montezuma

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This post may contain affiliate links to products I use and highly recommend. You can read my full disclosure . As an Amazon Associate I earn from qualifying purchases.

This Keto Bagel recipe is chewy and easy to make with simple ingredients. It’s made with a modified fathead pizza dough and only requires 15 minutes of hands-on time. Enjoy this low carb bagel with a wide range of keto-friendly toppings for a quick breakfast or brunch. 

keto bagels on a ceramic plate topped with everything bagel seasoning.

Why Make Fathead Bagels

There’s nothing like biting into a warm bagel with cream cheese. In fact, bagels are one of almost everyone’s favorite comfort foods.

So, if you’re on a low-carb diet and you’ve been missing bagels, then you must try this easy Keto Bagels recipe.

Some of my top reasons to make these almond flour bagels are:

  • Option for the keto diet: When I was writing my dissertation, I often “rewarded” my effort by grabbing a Nova Lox sandwich on an Everything Bagel. Little did I know, traditional bagels had at least 56g of net carbs. This easy low carb keto bagel recipe has about 5g.
  • Easy to make: this recipe is actually super simple. In fact, these have just four main steps – heat the cheeses, mix the fat head dough, chill and bake.

Ingredients Needed

Making chewy keto bagels doesn’t take much. Here’s what you’ll need to gather:

  • Shredded Mozzarella Cheese: you’ll want to get the packaged, low moisture kind. The mozzarella that comes in liquid does not work for this recipe.
  • Cream Cheese: I use full fat cream cheese
  • Onion Salt: I’m using a specific brand (Trader Joes). This mix is not like other onion salt. Instead, I notice it tastes like a lightly seasoned onion powder. If you don’t have access to that one, you can mix 1/2 tsp onion powder, 1/2 tsp garlic powder, and 1/4 tsp parsley to use as a replacement
  • Psyllium Husk: this is optional, but after making this keto bagels recipe a lot, this helps to give the bagels structure and make them chewier (something that real bagels are)
  • Almond Flour: I‘m using super fine, blanched almond flour
  • Baking Powder
  • Garlic Powder
  • Egg: I use large eggs

Almond Flour Bagel Toppings

I add the following to the tops of the bagels before baking:

  • Everything Bagel Seasoning: You can just sprinkle the seasoning on top. You can also substitute this with things like sesame seeds, poppy seeds, and dried onion flakes.
  • Egg: the egg wash helps to give the bagels a shiny finish.

You can get the full list of ingredient amounts and instructions from the full recipe card at the end of the post.

ingredients needed to make a keto bagel like almond flour, baking powder, garlic powder, eggs, cream cheese, mozzarella cheese and psyllium husk on separate bowls

How to Make Keto Bagels with Fathead Dough:

This post includes a video with step-by-step instructions for how to make fathead dough. You can watch the video in the recipe card to see me make them. But a summary of the steps are as follows:

  1. Melt & mix the cheeses in a microwave-safe bowl: this requires a few rounds on heating the cheese mixture in the microwave and stirring it.
  2. Mix in the eggs and dry ingredients (flour, baking powder, spices, and psyllium husk) to form a dough
  3. Allow the dough to chill
  4. Form the bagels & bake: simply divide the dough into 4-6 balls. To get a bagel shape, you can either poke a hole in the center of each ball or form the dough around a donut pan.
step-by-step instructions for how to make Keto Bagels with almond flour fathead dough

Top Tips & FAQs

  • Get low moisture shredded mozzarella: the cheese that comes in liquid does not work ij this recipe.
  • Use the psyllium husk or a donut mold: The psyllium husk gives the bagel more structure (more details below). When I made this recipe without it, I used a donut mold. If you don’t have either, psyllium is a substitute for xanthan gum so xanthan gum could be a replacement (I just personally haven’t tried it in this recipe)
  • Fix sticky dough with a little more almond flour: if your dough happens to be too sticky, the best way to fix it is to simply add 1-2 tbsp of additional almond flour.
  • Use the dough attachment on a stand mixer if you can’t or don’t want to mix this keto bagel dough by hand

Bagel Toppings

My goal was to make a low carb Nova Lox bagel sandwich. So, the recipe in the card is savory. For a savory bagel, you can add things like:

  • Cream Cheese
  • Nova Lox or Smoked Salmon
  • Sliced Vegetables
  • Eggs & Bacon
  • Pizza Sauce & Cheese – similar to what I did in these Low Carb Pizza Bagels

Purpose of Psyllium Husk:

I first shared this recipe nearly two years ago. And, after some testing, I’ve realized that I prefer to include psyllium husk, an ingredient you may not have in your pantry. Some reasons that I use psyllium husk are:

  • Gives a more bread-like texture
  • Provides structure – without a donut mold, sometimes, traditional fathead dough bagels flatten when cooked
3 pieces of keto bagels on a large plate with cream cheese and chives

Keto Bagels Recipe Variations

Even though these bagels are savory, you can also use this recipe to make sweet fathead dough bagels.

For example, you can omit the spices and replace them with 1 tablespoon of keto sweetener and 1 teaspoon cinnamon. If you make a sweet bagel, you can top it with:

  • Cream Cheese
  • Sliced Berries
  • Keto Jam (or Sugar-free Jam)

Using Coconut Flour:

You cannot substitute coconut flour 1:1 for the almond flour in this recipe. Instead, I’d recommend that you try a recipe that was specifically tested with coconut flour if you need to. These coconut flour bagels are well-rated. I’ve personally used this coconut flour flatbread mix with success.

Storage & Leftovers

Store your leftover bagels in an airtight container for next time (up to 4 days). They also freeze well so feel free to store them in the freezer for up to 4 months.

To reheat these, I prefer to cut them in half and toast them on a griddle or pan until heated.

What bagel has the least amount of carbs?

Generally, grain-free bagels have the least amount of carbs because they do not have flour.

Do low carb bagels exist?

Yes! This recipe is 5g net carbs.

Are whole wheat bagels keto friendly?

Regular whole wheat bagels use whole wheat flour, which results in them having at least 56g net carbs. So, this wouldn’t fit a keto way of eating since most people following keto have 20g of net carbs or less per day to stay in ketosis. Plus, most carbs on keto come from vegetables.

Recipes to Enjoy This With:

Some of my favorite ways to enjoy this low carb bagels recipe are:

  • Make a keto breakfast sandwich: add eggs, air fryer bacon and cheese to one of these bagels
  • Keto Tuna Salad Sandwich: use these golden brown low-carb bagels as the base for a tuna salad sandwich

More Keto Bread & Fathead Dough Recipes:

  • Parmesan Garlic Bread Bites
  • 90-Second Keto Bread
  • Coconut Flour Bread
  • Keto Farmer’s Bread
  • Keto Cinnamon Rolls

If you try this recipe, please stop back and leave it a star rating and/or a review in the comments. Stay connected & share photos of your creations with me & others on Instagram, Facebook, and Pinterest! 

three keto bagels on a plate with cream cheese and chives

Keto Bagels Recipe (Fathead Dough Bagels)

Make Keto Bagels minus the carbs. Ready quickly with common ingredients. 5g net carbs per bagel.
Prep: 15 minutes mins
Cook: 15 minutes mins
Ready in: 30 minutes mins
Cuisine: American
Course: Breakfast
Servings: 5
Calories: 272kcal
Author: Davinah
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Recommended Equipment

Mixing Bowl

Ingredients

  • 1.5 cups shredded mozzarella cheese, low moisture
  • 2 oz Cream Cheese
  • 1 tbsp Baking Powder
  • 1 tsp Garlic Powder
  • 2 tsp onion salt, I use the one from Trader Joes because it has a blend of onion powder, salt, and parsley. It is also pretty low in salt. If you don't have that one – you can substitute – 1/2 tsp onion powder, 1/2 tsp garlic powder, and 1/4 tsp parsley.
  • 1 tbsp psyllium husk, optional, but it makes the bagel more bread-like
  • 3/4 cup Almond Flour
  • 1 large Eggs, beaten

Bagel Toppings

  • 1 tbsp Everything Bagel Seasoning, You can just sprinkle the seasoning on top. I used about 1/2 tsp per bagel.
  • 1 large Eggs, beat this and use it for the egg wash

Instructions

  • Preheat the oven to 400 degrees
  • Mix almond flour with baking powder, garlic powder, onion salt and psyllium husk. Set aside.
  • Add mozzarella and cream cheese to a large microwave safe mixing bowl
  • Heat the cheeses in the microwave for 45 seconds
  • Use a mixing spatula to incorporate the cheese
  • Heat the cheese mixture again for 45 seconds
  • Add the almond flour mixture and the egg to the cheese mixture.
  • Mix until well incorporated and a ball of dough forms
  • Cover the ball of dough with plastic wrap and refrigerate for 10 minutes. This allowed the dough to firm up a bit more and cool down.
  • Split the dough into 4-5 balls. Use your finger to press a hole in the center.
  • Add the bagels to a baking sheet and brush each bagel with the egg wash
  • Sprinkle your preferred seasoning to the top of each bagel. I used Everything Bagel from Trader Joes.
  • Cook the bagels for 15 minutes or until the tops of the bagels are golden
  • Optional: Slice the bagels in half and toast them in a heated griddle pan or skillet. Simply add a thin coat of cooking spray (I use Coconut Oil Spray) and place the bagel halves inside down into the pan. Allow the bagels to brown on the inside (~1 minute)

Recipe Notes

  • If you need to make this recipe with Coconut Flour – please see the post for a recipe option or purchase this coconut flour flatbread mix. 
  • If you don’t use psyllium husk – I recommend making the bagels in a donut mold. It’ll help the bagels keep their shape as they cook. 
 

Nutrition Details

Calories: 272kcal | Carbohydrates: 8g | Protein: 14g | Fat: 21g | Saturated Fat: 8g | Cholesterol: 104mg | Sodium: 1205mg | Potassium: 315mg | Fiber: 3g | Sugar: 1g | Vitamin A: 475IU | Calcium: 336mg | Iron: 1.3mg

The nutrition facts come from entering the recipe ingredients into Spoonacular API, a database of food ingredients. They may vary for any recipe based on the exact product used. The keto sweeteners I use have 0g net carbs & are not included because sugar alcohols do not impact most people. This is provided as a courtesy, but you can do your own calculations if you wish!

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close up photo of Davinah - the blogger behind Dr. Davinah\'s Eats welcome text that reads, \"I\'m Davinah\" I'm an educator & hardcore foodie who realized eating "all the things" couldn’t last forever. After getting my PhD in Education, I decided to make eating healthier my next big goal. Here, you'll find my collection of keto, low-carb and whole food comfort food recipes. Read More

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